Status
This genome was sequenced using single cell approach. Summary
statistics for the v1.0 release are below.
Genome Assembly | |
Genome Assembly size (Mbp} | 120.88 |
Sequencing read coverage depth | 1x |
# of contigs | 47675 |
# of scaffolds | 47675 |
# of scaffolds >= 2Kbp | 16611 |
Scaffold N50 | 6687 |
Scaffold L50 (Mbp) | 0.00 |
# of gaps | 0 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 0.08, 0.06, 0.06 |
Gene Models | FilteredModels1 | |
length (bp) of: | average | median |
gene | 1304 | 990 |
transcript | 1154 | 870 |
exon | 306 | 144 |
intron | 56 | 49 |
description: | ||
protein length (aa) | 385 | 290 |
exons per gene | 3.77 | 3 |
# of gene models | 40072 |
Collaborators
Steven Singer, Joint BioEnergy Institute
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.