Status
[September 2019] The Sphaerosporella brunnea Sb_GMNB300 v2.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
Summary statistics for the Sphaerosporella brunnea
Sb_GMNB300 v2.0 release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 51.60 |
Sequencing read coverage depth | 907.91x |
# of contigs | 872 |
# of scaffolds | 872 |
# of scaffolds >= 2Kbp | 832 |
Scaffold N50 | 130 |
Scaffold L50 (Mbp) | 0.12 |
# of gaps | 0 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 0.43, 0.43, 0.40 |
ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
EstClusters | ESTclusters | 67171 | 59345 | 88.3% |
Ests | est.fasta | 161433827 | 156271382 | 96.8% |
Gene Models | FilteredModels1 | |
length (bp) of: | average | median |
gene | 1555 | 1308 |
transcript | 1389 | 1150 |
exon | 457 | 291 |
intron | 83 | 60 |
description: | ||
protein length (aa) | 397 | 310 |
exons per gene | 3.04 | 3 |
# of gene models | 12597 |
Collaborators
Gian Maria Niccolò Benucci, Michigan State University, USA
Francis M. Martin, INRA, France.
Joseph Spatafora, Oregon State University, USA
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Benucci GMN, Haridas S, Labutti K, Marozzi G, Antonielli L, Sanchez S, Marco P, Wang X, Barry K, Lipzen A, Chovatia M, Hundley H, Baciarelli Falini L, Murat C, Martin F, Albertini E, Donnini D, Grigoriev IV, Bonito G
Draft Genome Sequence of the Ectomycorrhizal Ascomycete Sphaerosporella brunnea.
Microbiol Resour Announc. 2019 Dec 12;8(50):. doi: 10.1128/MRA.00857-19
Benucci GMN, Haridas S, Labutti K, Marozzi G, Antonielli L, Sanchez S, Marco P, Wang X, Barry K, Lipzen A, Chovatia M, Hundley H, Baciarelli Falini L, Murat C, Martin F, Albertini E, Donnini D, Grigoriev IV, Bonito G
Draft Genome Sequence of the Ectomycorrhizal Ascomycete Sphaerosporella brunnea.
Microbiol Resour Announc. 2019 Dec 12;8(50):. doi: 10.1128/MRA.00857-19
Links
- 1000 Fungal Genomes Project
- Mycorrhizal fungi on MycoCosm
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Pezizomycetes Pezizales Pyronemataceae
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.