Status
The genome of Spathularia flavida was not sequenced by the JGI but by the Oregon State University within the AFTOL project. For more information, contact Prof. Dr. Joey Spatafora (spatafoj@science.oregonstate.edu). JGI tools were used to automatically annotate predicted proteins.
Summary statistics for the Spathularia flavida genome v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 35.54 |
| Sequencing read coverage depth | 125.38x |
| # of contigs | 5460 |
| # of scaffolds | 2195 |
| # of scaffolds >= 2Kbp | 1093 |
| Scaffold N50 | 180 |
| Scaffold L50 (Mbp) | 0.06 |
| # of gaps | 3265 |
| % of scaffold length in gaps | 1.4% |
| Three largest Scaffolds (Mbp) | 0.32, 0.30, 0.23 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1932 | 1567 |
| transcript | 1644 | 1341 |
| exon | 472 | 247 |
| intron | 118 | 64 |
| description: | ||
| protein length (aa) | 548 | 447 |
| exons per gene | 3.48 | 3 |
| # of gene models | 9941 |
Collaborators
PI: Joey Spatafora, Oregon State University
Funding
This project was not sequenced at the JGI.
