Status
This genome was sequenced at Oregon State Univesity, and not by the JGI.
Summary statistics for the Rhizopogon vesiculosus Smith
release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 43.81 |
Sequencing read coverage depth | |
# of contigs | 13804 |
# of scaffolds | 6700 |
# of scaffolds >= 2Kbp | 2771 |
Scaffold N50 | 388 |
Scaffold L50 (Mbp) | 0.03 |
# of gaps | 7104 |
% of scaffold length in gaps | 3.3% |
Three largest Scaffolds (Mbp) | 0.45, 0.26, 0.21 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 1468 | 1095 |
transcript | 1157 | 860 |
exon | 216 | 134 |
intron | 73 | 55 |
description: | ||
protein length (aa) | 367 | 264 |
exons per gene | 5.36 | 4 |
# of gene models | 14218 |
Collaborators
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Mujic AB, Kuo A, Tritt A, Lipzen A, Chen C, Johnson J, Sharma A, Barry K, Grigoriev IV, Spatafora JW
Comparative Genomics of the Ectomycorrhizal Sister Species Rhizopogon vinicolor and Rhizopogon vesiculosus (Basidiomycota: Boletales) Reveals a Divergence of the Mating Type B Locus.
G3 (Bethesda). 2017 Jun 7;7(6):1775-1789. doi: 10.1534/g3.117.039396
Mujic AB, Kuo A, Tritt A, Lipzen A, Chen C, Johnson J, Sharma A, Barry K, Grigoriev IV, Spatafora JW
Comparative Genomics of the Ectomycorrhizal Sister Species Rhizopogon vinicolor and Rhizopogon vesiculosus (Basidiomycota: Boletales) Reveals a Divergence of the Mating Type B Locus.
G3 (Bethesda). 2017 Jun 7;7(6):1775-1789. doi: 10.1534/g3.117.039396
Funding
This project was not sequenced at the JGI.