Status
[May 2024] The Lipomyces japonicus NRRL Y-11784 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 13.37 |
| Sequencing read coverage depth | 488.3x |
| # of contigs | 182 |
| # of scaffolds | 175 |
| # of scaffolds >= 2Kbp | 150 |
| Scaffold N50 | 20 |
| Scaffold L50 (Mbp) | 0.24 |
| # of gaps | 7 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.62, 0.50, 0.49 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 20382 | 19288 | 94.6% |
| Ests | est.fasta | 200150631 | 197421314 | 98.6% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1890 | 1664 |
| transcript | 1755 | 1539 |
| exon | 620 | 342 |
| intron | 76 | 65 |
| description: | ||
| protein length (aa) | 469 | 391 |
| exons per gene | 2.83 | 2 |
| # of gene models | 5875 |
Collaborators
- Kyle Pomraning, Pacific Northwest National Laboratory, WA
- Scott Baker, Environmental Molecular Science Laboratory, WA
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Saccharomycotina Saccharomycetes Saccharomycetales Lipomycetaceae Lipomyces
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
