Status
The Hirsutella minnesotensis 3608 genome sequence and gene models were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Nov 5, 2020. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into MycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.
Summary statistics for the Hirsutella minnesotensis 3608
release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 51.06 |
Sequencing read coverage depth | 128.3x |
# of contigs | 1890 |
# of scaffolds | 731 |
# of scaffolds >= 2Kbp | 731 |
Scaffold N50 | 35 |
Scaffold L50 (Mbp) | 0.38 |
# of gaps | 1159 |
% of scaffold length in gaps | 2.4% |
Three largest Scaffolds (Mbp) | 1.67, 1.46, 1.22 |
Gene Models | FilteredModels1 | |
length (bp) of: | average | median |
gene | 1607 | 1336 |
transcript | 1472 | 1212 |
exon | 547 | 308 |
intron | 82 | 64 |
description: | ||
protein length (aa) | 491 | 404 |
exons per gene | 2.69 | 2 |
# of gene models | 10463 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Lai Y, Liu K, Zhang X, Zhang X, Li K, Wang N, Shu C, Wu Y, Wang C, Bushley KE, Xiang M, Liu X
Comparative genomics and transcriptomics analyses reveal divergent lifestyle features of nematode endoparasitic fungus Hirsutella minnesotensis.
Genome Biol Evol. 2014 Oct 30;6(11):3077-93. doi: 10.1093/gbe/evu241
Lai Y, Liu K, Zhang X, Zhang X, Li K, Wang N, Shu C, Wu Y, Wang C, Bushley KE, Xiang M, Liu X
Comparative genomics and transcriptomics analyses reveal divergent lifestyle features of nematode endoparasitic fungus Hirsutella minnesotensis.
Genome Biol Evol. 2014 Oct 30;6(11):3077-93. doi: 10.1093/gbe/evu241
Links
JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreales
Funding
This project was not sequenced at the JGI.