Info • Fusarium oxysporum f. sp. albedinis isolate 9 v1.0

Status

[September 2020] The Fusarium oxysporum f. sp. albedinis isolate 9 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Fusarium oxysporum f. sp. albedinis isolate 9 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 65.56
Sequencing read coverage depth 93.9x
# of contigs 114
# of scaffolds 114
# of scaffolds >= 2Kbp 111
Scaffold N50 9
Scaffold L50 (Mbp) 2.95
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.56, 5.13, 4.98


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 54130 48028 88.7%
Ests est.fasta 252581677 250925888 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1742 1508
transcript 1570 1367
exon 530 325
intron 90 57
description:
protein length (aa) 458 382
exons per gene 2.96 2
# of gene models 19411


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Khoulassa S, Elmoualij B, Benlyas M, Meziani R, Bouhlali EDT, Houria B, Alaoui YEH, Haridas S, Guo J, Lipzen A, Hurtado CV, Tejomurthula S, Barry K, Grigoriev IV, Coleman JJ, Ayhan DH, Ma LJ, Essarioui A
High-Quality Draft Nuclear and Mitochondrial Genome Sequence of Fusarium oxysporum f. sp. albedinis strain 9, the Causal Agent of Bayoud Disease on Date Palm.
Plant Dis. 2022 Jul;106(7):1974-1976. doi: 10.1094/PDIS-01-22-0245-A

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.