Status
[February 2024] The Fusarium proliferatum 312A_c15_2 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 61.91 |
| Sequencing read coverage depth | 47.26x |
| # of contigs | 82 |
| # of scaffolds | 82 |
| # of scaffolds >= 2Kbp | 82 |
| Scaffold N50 | 7 |
| Scaffold L50 (Mbp) | 3.72 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 6.51, 5.60, 5.15 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 43435 | 42150 | 97.0% |
| Ests | est.fasta | 114176352 | 113140840 | 99.1% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1716 | 1498 |
| transcript | 1561 | 1357 |
| exon | 527 | 318 |
| intron | 81 | 57 |
| description: | ||
| protein length (aa) | 460 | 387 |
| exons per gene | 2.96 | 2 |
| # of gene models | 19779 |
Collaborators
- Kathryn Bushley, USDA - Agricultural Research Service.
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreomycetidae Hypocreales Nectriaceae Fusarium
- JGI EcoGroup Portals: Plant Pathogens Plant Pathogenic Fungi
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
