Status
[February 2024] The Fusarium oxysporum 212A_T16_2 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 58.21 |
| Sequencing read coverage depth | 67.99x |
| # of contigs | 58 |
| # of scaffolds | 58 |
| # of scaffolds >= 2Kbp | 54 |
| Scaffold N50 | 6 |
| Scaffold L50 (Mbp) | 4.46 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 6.58, 5.85, 5.20 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 56977 | 54981 | 96.5% |
| Ests | est.fasta | 285710476 | 282774583 | 99.0% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1732 | 1506 |
| transcript | 1576 | 1378 |
| exon | 536 | 324 |
| intron | 83 | 56 |
| description: | ||
| protein length (aa) | 457 | 381 |
| exons per gene | 2.94 | 2 |
| # of gene models | 19237 |
Collaborators
- Kathryn Bushley, USDA - Agricultural Research Service.
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreomycetidae Hypocreales Nectriaceae Fusarium
- JGI EcoGroup Portals: Plant Pathogens Plant Pathogenic Fungi
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
